Pseudomonas aeruginosa PAO1, PA0595 (lptD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0050896 response to stimulus
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0015921 lipopolysaccharide export
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 25735820 Reviewed by curator
Biological Process GO:0015921 lipopolysaccharide export
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 20167788 Reviewed by curator
Biological Process GO:0032885 regulation of polysaccharide biosynthetic process
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 29923820 Reviewed by curator
Biological Process GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0010033 response to organic substance
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015920 lipopolysaccharide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0061024 membrane organization
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04453
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04453
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 58 101 -
Pfam PF03968 LptA/(LptD N-terminal domain) LPS transport protein IPR005653 Organic solvent tolerance-like, N-terminal 158 291 3.8E-10
MobiDBLite mobidb-lite consensus disorder prediction - - 58 87 -
Pfam PF04453 LPS transport system D IPR007543 LptD, C-terminal 403 831 2.2E-120
Hamap MF_01411 LPS-assembly protein LptD [lptD]. IPR020889 LPS-assembly protein LptD 15 899 20.559807
Gene3D G3DSA:2.60.450.10 Lipopolysaccharide (LPS) transport protein A like domain - - 152 302 3.0E-8
PANTHER PTHR30189 LPS-ASSEMBLY PROTEIN - - 5 916 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.