Pseudomonas aeruginosa PAO1, PA0888 (aotJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1903411 L-ornithine import into cell
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
18833300 Reviewed by curator
Biological Process GO:0015822 ornithine transport
IGI
Inferred from Genetic Interaction
ECO:0000316
genetic interaction evidence used in manual assertion
9791103 Reviewed by curator
Biological Process GO:0006810 transport
IDA
Inferred from Direct Assay
ECO:0000002
direct assay evidence
Biological Process GO:1902765 L-arginine import into cell
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
18833300 Reviewed by curator
Cellular Component GO:0005615 extracellular space
IDA
Inferred from Direct Assay
ECO:0001230
mass spectrometry evidence used in manual assertion
25488299 Reviewed by curator
Biological Process GO:1902023 L-arginine transport
IGI
Inferred from Genetic Interaction
ECO:0000316
genetic interaction evidence used in manual assertion
9791103 Reviewed by curator
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01096
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01096
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 26 252 2.5E-66
SMART SM00062 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 25 254 2.1E-81
ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. IPR018313 Solute-binding protein family 3, conserved site 48 61 -
CDD cd13703 PBP2_HisJ_LAO 24 251 4.69821E-138
TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter 4 251 1.3E-94
SUPERFAMILY SSF53850 1 255 3.03E-70
Gene3D G3DSA:3.40.190.10 111 211 2.0E-80
Gene3D G3DSA:3.40.190.10 27 250 2.0E-80

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.