Pseudomonas aeruginosa PAO1, PA0970 (tolR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Operons

Operon name: YbgC-tolQRA (P1 control) (4 gene members)
Locus Tag Gene Name Description Start End Strand Type
PA0968 conserved hypothetical protein 1053400 1053846 + CDS
Gene Details
PA0969 tolQ TolQ protein 1053848 1054543 + CDS
Gene Details
PA0970 tolR TolR protein 1054566 1055006 + CDS
Gene Details
PA0971 tolA TolA protein 1055009 1056052 + CDS
Gene Details
Evidence
A transcription unit is inferred from author statement. In this case, there is often a set of adjacent genes, encoded in the same direction, coding for products that participate in the same metabolic pathway or biological process.
References
Characterization of the orf1-tolQRA operon in Pseudomonas aeruginosa.
Wei Y, Li Z, Chen B, Liang H, Duan K
Microbiol. Immunol. 2009 Jun;53(6):309-18
PubMed ID: 19493198
Cross-References
PseudoCAP: 41709
Operon name: tolQRA (3 gene members)
Locus Tag Gene Name Description Start End Strand Type
PA0969 tolQ TolQ protein 1053848 1054543 + CDS
Gene Details
PA0970 tolR TolR protein 1054566 1055006 + CDS
Gene Details
PA0971 tolA TolA protein 1055009 1056052 + CDS
Gene Details
Evidence
A transcription unit is inferred from author statement. In this case, there is often a set of adjacent genes, encoded in the same direction, coding for products that participate in the same metabolic pathway or biological process.
References
Characterization of the orf1-tolQRA operon in Pseudomonas aeruginosa.
Wei Y, Li Z, Chen B, Liang H, Duan K
Microbiol. Immunol. 2009 Jun;53(6):309-18
PubMed ID: 19493198
Cross-References
PseudoCAP: 41710
Operon name: tolQ-tolR-tolA-tolB-oprL-PA0974 (6 gene members)
Locus Tag Gene Name Description Start End Strand Type
PA0969 tolQ TolQ protein 1053848 1054543 + CDS
Gene Details
PA0970 tolR TolR protein 1054566 1055006 + CDS
Gene Details
PA0971 tolA TolA protein 1055009 1056052 + CDS
Gene Details
PA0972 tolB TolB protein 1056049 1057347 + CDS
Gene Details
PA0973 oprL Peptidoglycan associated lipoprotein OprL precursor 1057400 1057906 + CDS
Gene Details
PA0974 conserved hypothetical protein 1057916 1058740 + CDS
Gene Details
Evidence
Computationally-predicted.
References
DOOR: a database for prokaryotic operons.
Mao F, Dam P, Chou J, Olman V, Xu Y
Nucleic Acids Res. 2009 Jan;37(Database issue):D459-63
PubMed ID: 18988623
Cross-References
DOOR: 13313
Operon name: tolQR (2 gene members)
Experiment Attributes
method: Northern blot
Locus Tag Gene Name Description Start End Strand Type
PA0969 tolQ TolQ protein 1053848 1054543 + CDS
Gene Details
PA0970 tolR TolR protein 1054566 1055006 + CDS
Gene Details
Evidence
Transcription unit experimentally validated in a strain of the same species. The start coordinate will often be based on an experimentally validated transcription start site. For protein-coding genes, unless otherwise specified, the stop will be based on the stop codon.
References
Identification and characterization of the tolQRA genes of Pseudomonas aeruginosa.
Dennis JJ, Lafontaine ER, Sokol PA
J Bacteriol 1996 Dec;178(24):7059-68
PubMed ID: 8955385
Cross-References
PseudoCAP: 41711