Pseudomonas aeruginosa PAO1, PA1321 (cyoE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006091 generation of precursor metabolites and energy
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006783 heme biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008495 protoheme IX farnesyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01473 JCVI: heme o synthase IPR006369 Protohaem IX farnesyltransferase 4 282 1.6E-87
PANTHER PTHR43448 PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL IPR006369 Protohaem IX farnesyltransferase 4 282 7.6E-62
Pfam PF01040 UbiA prenyltransferase family IPR000537 UbiA prenyltransferase family 19 267 4.9E-57
Gene3D G3DSA:1.10.357.140 UbiA prenyltransferase IPR044878 UbiA prenyltransferase superfamily 13 168 3.6E-33
FunFam G3DSA:1.10.357.140:FF:000001 Protoheme IX farnesyltransferase - - 10 164 4.0E-59
Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. IPR006369 Protohaem IX farnesyltransferase 2 284 17.448235
CDD cd13957 PT_UbiA_Cox10 IPR006369 Protohaem IX farnesyltransferase 7 278 5.74978E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.