Pseudomonas aeruginosa PAO1, PA1904 (phzF2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0002047 phenazine biosynthetic process
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 11591691 Reviewed by curator
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00654
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00654
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Phenazine biosynthesis ECO:0000037
not_recorded
KEGG pae02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc PWYB-5652 Phenazine biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02567 Phenazine biosynthesis-like protein IPR003719 Phenazine biosynthesis PhzF-like 7 274 3.2E-85
Gene3D G3DSA:3.10.310.10 Diaminopimelate Epimerase; Chain A, domain 1 - - 120 266 9.0E-100
NCBIfam TIGR00654 JCVI: PhzF family phenazine biosynthesis isomerase IPR003719 Phenazine biosynthesis PhzF-like 5 273 2.1E-55
PIRSF PIRSF016184 Ismrse_PhzF IPR003719 Phenazine biosynthesis PhzF-like 1 278 8.0E-82
Gene3D G3DSA:3.10.310.10 Diaminopimelate Epimerase; Chain A, domain 1 - - 7 119 9.0E-100
SUPERFAMILY SSF54506 Diaminopimelate epimerase-like - - 2 277 2.79E-67
PANTHER PTHR13774 PHENAZINE BIOSYNTHESIS PROTEIN IPR003719 Phenazine biosynthesis PhzF-like 3 275 1.3E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.