Pseudomonas aeruginosa PAO1, PA3617 (recA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006281 DNA repair
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2823059 Reviewed by curator
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45900
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45900
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45900
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 210 238 8.6E-85
PANTHER PTHR45900 RECA IPR013765 DNA recombination and repair protein RecA 3 335 0.0
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 297 314 8.6E-85
FunFam G3DSA:3.40.50.300:FF:000087 Recombinase RecA - - 33 330 0.0
Hamap MF_00268 Protein RecA [recA]. IPR013765 DNA recombination and repair protein RecA 5 329 50.980106
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 127 156 8.6E-85
Pfam PF00154 recA bacterial DNA recombination protein IPR013765 DNA recombination and repair protein RecA 7 267 0.0
SUPERFAMILY SSF54752 RecA protein, C-terminal domain IPR023400 DNA recombination and repair protein RecA, C-terminal 269 324 8.24E-20
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 57 228 9.7E-11
CDD cd00983 RecA IPR013765 DNA recombination and repair protein RecA 36 269 0.0
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 93 122 8.6E-85
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 243 272 8.6E-85
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 165 194 8.6E-85
NCBIfam TIGR02012 JCVI: recombinase RecA IPR013765 DNA recombination and repair protein RecA 4 324 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 5 267 5.88E-65
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 34 330 7.4E-128

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.