Pseudomonas aeruginosa PAO1, PA3627 (ygbB)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0051188	obsolete cofactor biosynthetic process	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Biological Process	GO:0016114	terpenoid biosynthetic process	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00107	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00107	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Biosynthesis of cofactors, prosthetic groups and carriers Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae00900	Terpenoid backbone biosynthesis	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae01130	Biosynthesis of antibiotics	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae01110	Biosynthesis of secondary metabolites	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.1330.50	-	IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	1	157	2.4E-75
Hamap	MF_00107	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF].	IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	1	156	36.806068
PANTHER	PTHR43181	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC	IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	1	156	9.6E-70
Pfam	PF02542	YgbB family	IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	1	154	6.6E-67
CDD	cd00554	MECDP_synthase	IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2	154	3.79033E-92
SUPERFAMILY	SSF69765	IpsF-like	IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	1	155	5.63E-67
NCBIfam	TIGR00151	JCVI: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2	155	1.4E-72
FunFam	G3DSA:3.30.1330.50:FF:000001	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-	-	1	157	4.9E-81

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.