Pseudomonas aeruginosa PAO1, PA3642 (rnhB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0004652 polynucleotide adenylyltransferase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0004523 RNA-DNA hybrid ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00052_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07182 RNase_HII_bacteria_HII_like IPR022898 Ribonuclease HII 15 191 4.25934E-120
FunFam G3DSA:3.30.420.10:FF:000006 Ribonuclease HII - - 6 199 2.6E-89
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 13 197 1.67E-71
Hamap MF_00052_B Ribonuclease HII [rnhB]. IPR022898 Ribonuclease HII 13 192 39.28492
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 6 201 8.5E-78
PANTHER PTHR10954 RIBONUCLEASE H2 SUBUNIT A IPR001352 Ribonuclease HII/HIII 11 197 4.4E-35
Pfam PF01351 Ribonuclease HII IPR024567 Ribonuclease HII/HIII domain 15 191 2.9E-42

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.