Pseudomonas aeruginosa PAO1, PA3803 (gcpE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00159
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF51717
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016114 terpenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00159
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Terpenoid biosynthesis ECO:0000037
not_recorded
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51717 Dihydropteroate synthetase-like IPR011005 Dihydropteroate synthase-like 17 209 1.49E-10
Coils Coil Coil - - 342 366 -
Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 9 361 35.44059
NCBIfam TIGR00612 JCVI: (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 11 353 0.0
PIRSF PIRSF004640 IspG IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial 3 364 0.0
Pfam PF04551 GcpE protein IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 15 354 0.0
Gene3D G3DSA:3.20.20.20 - IPR011005 Dihydropteroate synthase-like 2 263 9.3E-109
Gene3D G3DSA:3.30.413.10 Sulfite Reductase Hemoprotein, domain 1 IPR045854 Nitrite and sulphite reductase 4Fe-4S domain-like superfamily 264 363 3.3E-26
PANTHER PTHR30454 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 4 255 0.0
SUPERFAMILY SSF56014 Nitrite and sulphite reductase 4Fe-4S domain-like IPR045854 Nitrite and sulphite reductase 4Fe-4S domain-like superfamily 267 354 3.6E-12
FunFam G3DSA:3.20.20.20:FF:000001 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) - - 5 263 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.