Pseudomonas aeruginosa PAO1, PA4246 (rpsE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2989779 Reviewed by curator
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR48277
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015935 small ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01307_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01307_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR48277
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01307_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03719 Ribosomal protein S5, C-terminal domain IPR005324 Small ribosomal subunit protein uS5, C-terminal 90 158 1.4E-30
SUPERFAMILY SSF54768 dsRNA-binding domain-like - - 10 77 1.05E-22
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 75 166 7.5E-33
Pfam PF00333 Ribosomal protein S5, N-terminal domain IPR013810 Small ribosomal subunit protein uS5, N-terminal 14 75 3.4E-27
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 81 160 7.33E-26
FunFam G3DSA:3.30.160.20:FF:000001 30S ribosomal protein S5 - - 1 73 1.5E-34
NCBIfam TIGR01021 JCVI: 30S ribosomal protein S5 IPR005712 Small ribosomal subunit protein uS5, bacterial-type 11 164 9.1E-65
Gene3D G3DSA:3.30.160.20 - - - 1 74 5.1E-27
FunFam G3DSA:3.30.230.10:FF:000002 30S ribosomal protein S5 - - 76 166 4.3E-37
Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. IPR005712 Small ribosomal subunit protein uS5, bacterial-type 1 164 33.767998
PANTHER PTHR48277 MITOCHONDRIAL RIBOSOMAL PROTEIN S5 IPR000851 Small ribosomal subunit protein uS5 5 164 1.5E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.