Pseudomonas aeruginosa PAO1, PA4258 (rplV)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 7007072 Reviewed by curator
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00336
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00336
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015934 large ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01044
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00336
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.90.470.10:FF:000001 50S ribosomal protein L22 - - 1 110 4.4E-55
Gene3D G3DSA:3.90.470.10 Ribosomal protein L22/L17 IPR036394 Ribosomal protein uL22 superfamily 1 110 9.5E-43
CDD cd00336 Ribosomal_L22 IPR001063 Large ribosomal subunit protein uL22 5 107 3.42257E-42
Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. IPR005727 Large ribosomal subunit protein uL22, bacterial/chloroplast-type 1 110 27.803797
NCBIfam TIGR01044 JCVI: 50S ribosomal protein L22 IPR005727 Large ribosomal subunit protein uL22, bacterial/chloroplast-type 5 107 3.1E-44
Coils Coil Coil - - 41 61 -
Pfam PF00237 Ribosomal protein L22p/L17e IPR001063 Large ribosomal subunit protein uL22 5 107 1.1E-35
SUPERFAMILY SSF54843 Ribosomal protein L22 IPR036394 Ribosomal protein uL22 superfamily 1 109 6.8E-42
PANTHER PTHR13501 CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED IPR047867 Large ribosomal subunit protein uL22, bacterial/organelle-type 2 109 3.4E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.