Pseudomonas aeruginosa PAO1, PA4263 (rplC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 3892488 Reviewed by curator
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11229
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11229
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11229
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00297 Ribosomal protein L3 IPR000597 Large ribosomal subunit protein uL3 44 182 3.5E-16
SUPERFAMILY SSF50447 Translation proteins IPR009000 Translation protein, beta-barrel domain superfamily 1 208 1.24E-81
FunFam G3DSA:3.30.160.810:FF:000001 50S ribosomal protein L3 - - 32 96 2.7E-26
FunFam G3DSA:2.40.30.10:FF:000004 50S ribosomal protein L3 - - 128 209 3.3E-39
Gene3D G3DSA:2.40.30.10 Translation factors - - 128 209 3.0E-26
NCBIfam TIGR03625 JCVI: 50S ribosomal protein L3 IPR019927 Large ribosomal subunit protein uL3, bacterial/organelle-type 4 204 5.4E-92
Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. IPR019927 Large ribosomal subunit protein uL3, bacterial/organelle-type 2 207 40.239071
Gene3D G3DSA:3.30.160.810 - - - 34 95 1.4E-19
PANTHER PTHR11229 50S RIBOSOMAL PROTEIN L3 IPR019927 Large ribosomal subunit protein uL3, bacterial/organelle-type 2 208 2.6E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.