Pseudomonas aeruginosa PAO1, PA4264 (rpsJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 3892488 Reviewed by curator
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01049
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01049
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01049
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class
Transcription, RNA processing and degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. IPR001848 Small ribosomal subunit protein uS10 3 102 27.006712
FunFam G3DSA:3.30.70.600:FF:000001 30S ribosomal protein S10 - - 1 102 1.2E-55
PRINTS PR00971 Ribosomal protein S10 family signature IPR001848 Small ribosomal subunit protein uS10 40 55 6.7E-18
NCBIfam TIGR01049 JCVI: 30S ribosomal protein S10 IPR001848 Small ribosomal subunit protein uS10 4 101 1.1E-45
PRINTS PR00971 Ribosomal protein S10 family signature IPR001848 Small ribosomal subunit protein uS10 61 75 6.7E-18
SMART SM01403 Ribosomal_S10_2 IPR027486 Small ribosomal subunit protein uS10 domain 7 101 9.7E-56
Pfam PF00338 Ribosomal protein S10p/S20e IPR027486 Small ribosomal subunit protein uS10 domain 7 100 2.5E-34
PANTHER PTHR11700 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER IPR001848 Small ribosomal subunit protein uS10 2 101 6.5E-33
PRINTS PR00971 Ribosomal protein S10 family signature IPR001848 Small ribosomal subunit protein uS10 5 18 6.7E-18
Gene3D G3DSA:3.30.70.600 Ribosomal protein S10 domain IPR036838 Small ribosomal subunit protein uS10 domain superfamily 1 103 5.9E-42
SUPERFAMILY SSF54999 Ribosomal protein S10 IPR036838 Small ribosomal subunit protein uS10 domain superfamily 6 101 1.12E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.