Pseudomonas aeruginosa PAO1, PA4310 (pctB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Molecular Function GO:0016597 amino acid binding
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 23650915 Reviewed by curator
Biological Process GO:0006935 chemotaxis
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 9353923 Reviewed by curator
Biological Process GO:0006935 chemotaxis
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0030261 chromosome condensation

Biological Process GO:0043200 response to amino acid
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 9353923 Reviewed by curator
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Chemotaxis Other PAO1 genes in this class
Adaptation, Protection Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Chemotactic transducer (MCP) ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 298 629 3.6E-101
CDD cd12912 PDC2_MCP_like - - 178 265 6.73395E-22
Coils Coil Coil - - 498 521 -
SMART SM00304 HAMP_11 IPR003660 HAMP domain 387 447 18.0
MobiDBLite mobidb-lite consensus disorder prediction - - 405 424 -
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 320 629 1.07E-75
CDD cd11386 MCP_signal - - 394 593 5.15185E-60
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 367 628 7.2E-96
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 37 260 4.6E-22
SUPERFAMILY SSF103190 Sensory domain-like IPR029151 Periplasmic sensor-like domain superfamily 84 184 3.92E-10
FunFam G3DSA:3.30.450.20:FF:000048 Methyl-accepting chemotaxis protein - - 66 171 4.5E-30
Gene3D G3DSA:3.30.450.20 PAS domain - - 66 174 5.2E-67
Gene3D G3DSA:1.10.287.950 - - - 299 629 2.0E-75
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 28 628 6.6E-120
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 594 1.0E-44
Pfam PF00672 HAMP domain IPR003660 HAMP domain 296 348 6.3E-13
Coils Coil Coil - - 435 455 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 54 273 5.2E-67
CDD cd12913 PDC1_MCP_like - - 60 176 1.38906E-16
CDD cd06225 HAMP - - 301 347 1.04445E-11
SMART SM00304 HAMP_11 IPR003660 HAMP domain 298 352 5.5E-15
FunFam G3DSA:3.30.450.20:FF:000132 Methyl-accepting chemotaxis protein PctA - - 172 272 4.7E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.