Pseudomonas aeruginosa PAO1, PA4477 (cafA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0043093 FtsZ-dependent cytokinesis
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell division Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF10150 Ribonuclease E/G family IPR019307 RNA-binding protein AU-1/Ribonuclease E/G 115 389 5.5E-105
FunFam G3DSA:3.40.1260.20:FF:000001 Ribonuclease G Rng - - 399 485 6.3E-41
NCBIfam TIGR00757 JCVI: Rne/Rng family ribonuclease IPR004659 Ribonuclease E/G 14 422 0.0
Gene3D G3DSA:3.40.1260.20 Ribonuclease E, catalytic domain - - 398 485 7.1E-16
Coils Coil Coil - - 347 367 -
CDD cd04453 S1_RNase_E - - 34 119 7.17204E-37
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 38 100 8.0E-8
PANTHER PTHR30001 RIBONUCLEASE IPR004659 Ribonuclease E/G 3 483 0.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 31 118 2.5E-29
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 39 118 1.94E-19
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 37 113 3.5E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.