Pseudomonas aeruginosa PAO1, PA4544 (rluD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 17 104 8.41E-8
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 3 74 2.7E-16
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 18 63 4.8E-7
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 75 314 1.01E-80
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA-like 91 241 4.4E-32
CDD cd00165 S4 - - 18 95 2.03502E-7
PANTHER PTHR21600 MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE - - 19 308 2.0E-58
CDD cd02869 PseudoU_synth_RluA_like IPR006145 Pseudouridine synthase, RsuA/RluA-like 92 285 9.70907E-79
NCBIfam TIGR00005 JCVI: RluA family pseudouridine synthase IPR006225 Pseudouridine synthase, RluC/RluD 17 311 4.6E-95
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 83 315 7.9E-75
FunFam G3DSA:3.10.290.10:FF:000011 Pseudouridine synthase - - 2 75 1.2E-27
FunFam G3DSA:3.30.2350.10:FF:000006 Pseudouridine synthase - - 84 314 1.5E-105

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.