Pseudomonas aeruginosa PAO1, PA4807 (selB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001514 selenocysteine incorporation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2531290 Reviewed by curator
Molecular Function GO:0000049 tRNA binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 1939093 Reviewed by curator
Molecular Function GO:0035368 selenocysteine insertion sequence binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 8483932 Reviewed by curator
Molecular Function GO:0003746 translation elongation factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003924 GTPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005525 GTP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001514 selenocysteine incorporation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd15491 selB_III - - 266 352 2.83925E-34
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 163 5.3E-46
FunFam G3DSA:1.10.10.10:FF:000350 Selenocysteine-specific translation elongation factor - - 568 627 4.5E-26
PRINTS PR00315 GTP-binding elongation factor signature IPR000795 Translational (tr)-type GTP-binding domain 54 64 1.0E-7
Gene3D G3DSA:2.40.30.10 Translation factors - - 173 263 2.7E-21
Coils Coil Coil - - 529 549 -
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 578 626 5.44E-12
SUPERFAMILY SSF50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 269 365 6.83E-19
FunFam G3DSA:3.40.50.300:FF:001064 Selenocysteine-specific translation elongation factor - - 11 173 4.3E-72
NCBIfam TIGR00231 JCVI: small GTP-binding protein domain IPR005225 Small GTP-binding protein domain 3 159 3.9E-12
SUPERFAMILY SSF50447 Translation proteins IPR009000 Translation protein, beta-barrel domain superfamily 172 261 1.04E-17
CDD cd04171 SelB - - 2 171 2.47518E-97
PRINTS PR00315 GTP-binding elongation factor signature IPR000795 Translational (tr)-type GTP-binding domain 107 116 1.0E-7
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 568 627 2.1E-19
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 191 4.94E-43
FunFam G3DSA:2.40.30.10:FF:000080 Selenocysteine-specific translation elongation factor - - 176 263 7.2E-42
PANTHER PTHR43721 ELONGATION FACTOR TU-RELATED - - 2 352 8.8E-65
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 432 502 6.26E-15
Pfam PF09106 Elongation factor SelB, winged helix IPR015190 Translation elongation factor SelB, winged helix, type 2 442 497 1.4E-14
PRINTS PR00315 GTP-binding elongation factor signature IPR000795 Translational (tr)-type GTP-binding domain 2 15 1.0E-7
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 504 565 2.9E-23
Pfam PF00009 Elongation factor Tu GTP binding domain IPR000795 Translational (tr)-type GTP-binding domain 2 161 8.8E-31
Pfam PF09107 Elongation factor SelB, winged helix IPR015191 Translation elongation factor SelB, winged helix, type 3 583 625 3.1E-18
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 430 497 7.7E-6
PRINTS PR00315 GTP-binding elongation factor signature IPR000795 Translational (tr)-type GTP-binding domain 70 81 1.0E-7
NCBIfam TIGR00475 JCVI: selenocysteine-specific translation elongation factor IPR004535 Translation elongation factor, selenocysteine-specific 1 627 0.0
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 504 566 1.41E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.