Pseudomonas aeruginosa PAO1, PA4897

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 18086184 Reviewed by curator
Biological Process GO:0007166 cell surface receptor signaling pathway
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 18086184 Reviewed by curator
Molecular Function GO:0022857 transmembrane transporter activity

Molecular Function GO:0038023 signaling receptor activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 18086184 Reviewed by curator
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 97 148 1.2E-11
FunFam G3DSA:3.55.50.30:FF:000002 Probable TonB-dependent receptor - - 68 170 8.5E-32
Gene3D G3DSA:3.55.50.30 - - - 70 168 2.1E-23
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 172 297 3.0E-37
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 454 987 2.7E-40
MobiDBLite mobidb-lite consensus disorder prediction - - 313 332 -
SUPERFAMILY SSF56935 Porins - - 161 989 4.33E-86
PANTHER PTHR30442 IRON III DICITRATE TRANSPORT PROTEIN FECA IPR039426 TonB-dependent receptor-like 88 989 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 313 327 -
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 338 989 1.6E-128
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 178 281 4.9E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.