Pseudomonas aeruginosa PAO1, PA4928

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 680 694 -
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 375 628 1.4E-7
PANTHER PTHR32331 UPF0313 PROTEIN YGIQ IPR022946 Uncharacterised protein family UPF0313 1 691 0.0
SFLD SFLDG01069 UPF0313 IPR022946 Uncharacterised protein family UPF0313 8 692 0.0
Pfam PF11842 Domain of unknown function (DUF3362) IPR024560 UPF0313, C-terminal 593 734 4.0E-54
MobiDBLite mobidb-lite consensus disorder prediction - - 670 747 -
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 379 584 3.8E-22
SFLD SFLDG01082 B12-binding domain containing - - 47 606 2.6E-20
SUPERFAMILY SSF102114 Radical SAM enzymes - - 370 620 4.45E-14
NCBIfam TIGR03904 JCVI: YgiQ family radical SAM protein IPR022946 Uncharacterised protein family UPF0313 23 643 0.0
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 8 692 0.0
Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. IPR022946 Uncharacterised protein family UPF0313 23 645 50.777493
Pfam PF08497 Radical SAM N-terminal IPR013704 UPF0313, N-terminal 23 378 0.0
Gene3D G3DSA:3.80.30.20 tm_1862 like domain IPR023404 Radical SAM, alpha/beta horseshoe 374 638 3.8E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.