Pseudomonas aeruginosa PAO1, PA4934 (rpsR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2459389 Reviewed by curator
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 2459389 Reviewed by curator
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00165
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00165
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00165
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01084 Ribosomal protein S18 IPR001648 Small ribosomal subunit protein bS18 18 68 2.6E-25
Hamap MF_00270 30S ribosomal protein S18 [rpsR]. IPR001648 Small ribosomal subunit protein bS18 2 73 20.982935
PRINTS PR00974 Ribosomal protein S18 family signature IPR001648 Small ribosomal subunit protein bS18 38 45 2.9E-18
NCBIfam TIGR00165 JCVI: 30S ribosomal protein S18 IPR001648 Small ribosomal subunit protein bS18 4 72 8.4E-37
PRINTS PR00974 Ribosomal protein S18 family signature IPR001648 Small ribosomal subunit protein bS18 28 38 2.9E-18
PRINTS PR00974 Ribosomal protein S18 family signature IPR001648 Small ribosomal subunit protein bS18 60 70 2.9E-18
Gene3D G3DSA:4.10.640.10 Ribosomal protein S18 IPR036870 Small ribosomal subunit protein bS18 superfamily 1 74 2.4E-28
PRINTS PR00974 Ribosomal protein S18 family signature IPR001648 Small ribosomal subunit protein bS18 46 60 2.9E-18
PANTHER PTHR13479 30S RIBOSOMAL PROTEIN S18 IPR001648 Small ribosomal subunit protein bS18 8 72 1.4E-15
FunFam G3DSA:4.10.640.10:FF:000001 30S ribosomal protein S18 - - 1 74 2.0E-48
SUPERFAMILY SSF46911 Ribosomal protein S18 IPR036870 Small ribosomal subunit protein bS18 superfamily 3 74 2.62E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.