Pseudomonas aeruginosa PAO1, PA4945 (miaA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006400 tRNA modification
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 4341485 Reviewed by curator
Molecular Function GO:0052381 tRNA dimethylallyltransferase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 4341485 Reviewed by curator
Biological Process GO:0050896 response to stimulus
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00174
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc <i>cis</i>-zeatin biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11088 TRNA DIMETHYLALLYLTRANSFERASE IPR039657 Dimethylallyltransferase 6 296 4.7E-37
Gene3D G3DSA:1.10.20.140 - - - 115 184 6.5E-29
Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. IPR018022 IPP transferase 7 314 29.931915
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 6 318 5.7E-71
Pfam PF01715 IPP transferase - - 41 294 2.0E-87
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 8 152 2.5E-18
FunFam G3DSA:1.10.20.140:FF:000001 tRNA dimethylallyltransferase - - 115 185 5.1E-29
NCBIfam TIGR00174 JCVI: tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA IPR018022 IPP transferase 7 303 2.0E-101

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.