Pseudomonas aeruginosa PAO1, PA5180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| OxyR binding site | 5831805 | 5831819 | - |
ECO:0000314
direct assay evidence used in manual assertion |
22275523 | Details |
| Inverted repeat: CCAGTTCGAT-N48-ATCGAACTGG | 5831337 | 5831404 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 5831890 | 5831892 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GCCGACCTGC-N10-GCAGGTCGGC | 5831977 | 5832006 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGGCGCCGGC-N59-GCCGGCGCCG | 5832719 | 5832797 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGGCGCCGGC-N59-GCCGGCGCCG | 5832719 | 5832797 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |