Pseudomonas aeruginosa PAO1, PA5290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Shine-Dalgarno sequence | 5953249 | 5953251 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AlgU binding site | 5954921 | 5954958 | + |
|
Details | |
| VqsM binding site | 5953896 | 5953910 | - |
ECO:0000314
direct assay evidence used in manual assertion |
15289569 | Details |
| Inverted repeat: CGCCGCCAGCG-N96-CGCTGGCGGCG | 5953831 | 5953948 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| OxyR binding site | 5955102 | 5955116 | - |
ECO:0000314
direct assay evidence used in manual assertion |
22275523 | Details |
| Shine-Dalgarno sequence | 5955164 | 5955168 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |