Pseudomonas aeruginosa PAO1, PA5332 (crc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044248 cellular catabolic process
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006091 generation of precursor metabolites and energy
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0043609 regulation of carbon utilization
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 1906870 Reviewed by curator
Biological Process GO:0009372 quorum sensing
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 20626455 Reviewed by curator
Biological Process GO:1900190 regulation of single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 10629189 Reviewed by curator
Biological Process GO:0009405 pathogenesis
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 20626455 Reviewed by curator
Biological Process GO:0015976 carbon utilization
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03372
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class
Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03372 Endonuclease/Exonuclease/phosphatase family IPR005135 Endonuclease/exonuclease/phosphatase 5 233 2.1E-11
SUPERFAMILY SSF56219 DNase I-like IPR036691 Endonuclease/exonuclease/phosphatase superfamily 1 254 2.49E-53
CDD cd10281 Nape_like_AP-endo - - 1 253 0.0
Gene3D G3DSA:3.60.10.10 Endonuclease/exonuclease/phosphatase IPR036691 Endonuclease/exonuclease/phosphatase superfamily 1 259 1.1E-66
NCBIfam TIGR00633 JCVI: exodeoxyribonuclease III IPR004808 AP endonuclease 1 1 253 1.0E-57
FunFam G3DSA:3.60.10.10:FF:000001 Exodeoxyribonuclease III - - 1 259 0.0
PANTHER PTHR43250 - IPR037493 Exodeoxyribonuclease III-like 1 254 1.1E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.