Pseudomonas aeruginosa PAO1, PA5385 (cdhB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0042413 | carnitine catabolic process | Inferred from Mutant Phenotype | ECO:0000315 mutant phenotype evidence used in manual assertion |
19406895 | Reviewed by curator |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| PseudoCyc | PWYB-96 | Carnitine Catabolism to Glycine Betaine | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13279 | Thioesterase-like superfamily | - | - | 12 | 130 | 2.5E-17 |
| PANTHER | PTHR31793 | 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER | - | - | 9 | 137 | 1.4E-10 |
| Gene3D | G3DSA:3.10.129.10 | Hotdog Thioesterase | - | - | 1 | 140 | 2.9E-42 |
| SUPERFAMILY | SSF54637 | Thioesterase/thiol ester dehydrase-isomerase | IPR029069 | HotDog domain superfamily | 6 | 156 | 1.33E-45 |
| CDD | cd00586 | 4HBT | - | - | 7 | 116 | 1.03871E-22 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.