Pseudomonas aeruginosa PAO1, PA5556 (atpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 153904 Reviewed by curator
Biological Process GO:0015986 ATP synthesis coupled proton transport
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 4256722 Reviewed by curator
Biological Process GO:0046034 ATP metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02874
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00006
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1902600 proton transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02874
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0032559 adenyl ribonucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01132
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015986 ATP synthesis coupled proton transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Oxidative phosphorylation ECO:0000037
not_recorded
PseudoCyc PWY-7219 adenosine ribonucleotides de novo biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 97 382 1.3E-92
Gene3D G3DSA:2.40.30.20 - IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily 1 94 1.2E-33
FunFam G3DSA:3.40.50.300:FF:000002 ATP synthase subunit alpha - - 95 383 0.0
Gene3D G3DSA:1.20.150.20 - IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily 384 514 2.3E-48
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 95 383 1.8E-120
Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 150 376 2.4E-71
FunFam G3DSA:2.40.30.20:FF:000001 ATP synthase subunit alpha - - 1 94 8.3E-37
SUPERFAMILY SSF47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase - - 384 512 6.02E-45
PANTHER PTHR48082 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL IPR005294 ATP synthase, F1 complex, alpha subunit 3 510 0.0
CDD cd18116 ATP-synt_F1_alpha_N - - 28 94 2.35385E-30
Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain 30 93 1.6E-15
Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain IPR000793 ATP synthase, alpha subunit, C-terminal 383 508 2.5E-44
PIRSF PIRSF039088 F_ATPase_subunit_alpha IPR005294 ATP synthase, F1 complex, alpha subunit 2 514 0.0
CDD cd01132 F1-ATPase_alpha_CD IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain 95 379 0.0
Hamap MF_01346 ATP synthase subunit alpha [atpA]. IPR005294 ATP synthase, F1 complex, alpha subunit 2 513 50.076256
SUPERFAMILY SSF50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily 11 95 2.16E-28
NCBIfam TIGR00962 JCVI: F0F1 ATP synthase subunit alpha IPR005294 ATP synthase, F1 complex, alpha subunit 4 513 0.0
CDD cd18113 ATP-synt_F1_alpha_C IPR000793 ATP synthase, alpha subunit, C-terminal 387 511 5.53446E-62
FunFam G3DSA:1.20.150.20:FF:000001 ATP synthase subunit alpha - - 384 514 3.1E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.