Pseudomonas fluorescens Pf0-1, Pfl01_4221
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0000160 | phosphorelay signal transduction system |
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfo02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00486 | Transcriptional regulatory protein, C terminal | IPR001867 | OmpR/PhoB-type DNA-binding domain | 158 | 233 | 3.1E-19 |
| SMART | SM00448 | REC_2 | IPR001789 | Signal transduction response regulator, receiver domain | 9 | 119 | 1.4E-38 |
| SMART | SM00862 | Trans_reg_C_3 | IPR001867 | OmpR/PhoB-type DNA-binding domain | 157 | 233 | 1.4E-18 |
| PANTHER | PTHR48111 | REGULATOR OF RPOS | IPR039420 | Transcriptional regulatory protein WalR-like | 10 | 236 | 6.5E-50 |
| Gene3D | G3DSA:1.10.10.10 | - | IPR036388 | Winged helix-like DNA-binding domain superfamily | 134 | 239 | 8.3E-24 |
| Gene3D | G3DSA:6.10.250.690 | - | - | - | 89 | 125 | 1.8E-15 |
| SUPERFAMILY | SSF52172 | CheY-like | IPR011006 | CheY-like superfamily | 8 | 186 | 3.56E-38 |
| Pfam | PF00072 | Response regulator receiver domain | IPR001789 | Signal transduction response regulator, receiver domain | 11 | 119 | 3.7E-25 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 6 | 87 | 8.3E-20 |
| CDD | cd00383 | trans_reg_C | IPR001867 | OmpR/PhoB-type DNA-binding domain | 144 | 233 | 2.77551E-23 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.