Pseudomonas fluorescens Pf0-1, Pfl01_4308

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfo02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfo02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 28 132 3.22E-25
CDD cd00130 PAS IPR000014 PAS domain 152 254 5.4957E-10
SMART SM00091 pas_2 IPR000014 PAS domain 144 210 4.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 28 141 1.5E-15
CDD cd11386 MCP_signal - - 262 430 1.04431E-46
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 246 433 1.4E-14
SMART SM00086 pac_2 IPR001610 PAC motif 93 135 0.002
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 253 282 4.2E-21
Pfam PF08447 PAS fold IPR013655 PAS fold-3 43 128 5.1E-14
PANTHER PTHR24422 CHEMOTAXIS PROTEIN METHYLTRANSFERASE - - 18 429 2.9E-52
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 231 433 3.27E-54
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 153 254 1.66E-24
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 355 384 4.2E-21
Gene3D G3DSA:1.10.287.950 - - - 250 436 1.3E-45
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 153 262 6.0E-16
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 275 430 9.2E-39
CDD cd00130 PAS IPR000014 PAS domain 30 132 2.26382E-12
SMART SM00091 pas_2 IPR000014 PAS domain 18 85 0.17
Gene3D G3DSA:3.30.450.20 PAS domain - - 129 249 3.4E-23
Gene3D G3DSA:3.30.450.20 PAS domain - - 5 128 1.1E-20
SMART SM00086 pac_2 IPR001610 PAC motif 215 257 0.0047
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 326 353 4.2E-21
Pfam PF08447 PAS fold IPR013655 PAS fold-3 165 250 6.7E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.