Pseudomonas fluorescens F113, PSF113_0104 (aspA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008797 aspartate ammonia-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00839
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10415
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006531 aspartate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00839
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006099 tricarboxylic acid cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10415
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 17 347 8.0E-99
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 184 202 1.3E-28
PRINTS PR00145 Argininosuccinate lyase family signature - - 322 338 8.4E-5
PANTHER PTHR42696 ASPARTATE AMMONIA-LYASE - - 6 470 0.0
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 144 412 1.8E-81
Coils Coil Coil - - 53 73 -
NCBIfam TIGR00839 JCVI: aspartate ammonia-lyase IPR004708 Aspartate ammonia-lyase 8 468 0.0
Gene3D G3DSA:1.10.275.10 - IPR024083 Fumarase/histidase, N-terminal 8 143 1.7E-51
FunFam G3DSA:1.10.275.10:FF:000001 Fumarate hydratase, mitochondrial - - 8 143 1.7E-51
FunFam G3DSA:1.10.40.30:FF:000002 Fumarate hydratase class II - - 413 468 1.1E-17
PRINTS PR00145 Argininosuccinate lyase family signature - - 179 199 8.4E-5
Gene3D G3DSA:1.10.40.30 - - - 413 468 7.5E-18
FunFam G3DSA:1.20.200.10:FF:000001 Fumarate hydratase, mitochondrial - - 144 411 6.6E-114
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 139 157 1.3E-28
PRINTS PR00145 Argininosuccinate lyase family signature - - 138 160 8.4E-5
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 276 303 1.3E-28
CDD cd01357 Aspartase - - 8 459 0.0
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 322 338 1.3E-28
Pfam PF10415 Fumarase C C-terminus IPR018951 Fumarase C, C-terminal 413 465 1.6E-20
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 7 465 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.