Pseudomonas fluorescens F113, PSF113_3065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 245 406 3.0E-38
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 2 111 8.4E-12
Pfam PF08447 PAS fold IPR013655 PAS fold-3 13 98 8.1E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 101 216 1.2E-20
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 111 230 7.8E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 2 102 1.01E-21
Pfam PF08447 PAS fold IPR013655 PAS fold-3 135 220 1.2E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 3 100 1.7E-16
CDD cd00130 PAS IPR000014 PAS domain 122 224 3.32884E-11
SMART SM00086 pac_2 IPR001610 PAC motif 185 227 4.7E-5
SMART SM00086 pac_2 IPR001610 PAC motif 63 105 0.0028
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 139 409 7.85E-56
PANTHER PTHR24422 CHEMOTAXIS PROTEIN METHYLTRANSFERASE - - 1 359 1.9E-51
Gene3D G3DSA:1.10.287.950 - - - 217 412 4.2E-48
CDD cd00130 PAS IPR000014 PAS domain 1 102 3.36474E-9
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 198 421 2.4E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.