Pseudomonas fluorescens F113, PSF113_4489

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03246
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006525 arginine metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01107
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008483 transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03246
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006520 cellular amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03246
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 2 371 9.25E-123
FunFam G3DSA:3.40.640.10:FF:000004 Acetylornithine aminotransferase - - 32 278 1.0E-108
CDD cd00610 OAT_like IPR005814 Aminotransferase class-III 2 371 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 146 375 9.6E-34
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 2 365 0.0
Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. IPR004636 Acetylornithine/Succinylornithine transaminase family 2 375 67.82637
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 1 98 0.0017
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 32 277 0.0
NCBIfam TIGR00707 JCVI: acetylornithine/succinylornithine family transaminase IPR004636 Acetylornithine/Succinylornithine transaminase family 2 371 0.0
Pfam PF00202 Aminotransferase class-III IPR005814 Aminotransferase class-III 2 371 6.1E-128
PANTHER PTHR11986 AMINOTRANSFERASE CLASS III - - 2 373 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 93 131 9.5
NCBIfam TIGR03246 JCVI: acetylornithine/succinylornithine family transaminase IPR017652 Acetyl/Succinylornithine transaminase family, bacteria 2 375 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.