Pseudomonas fluorescens F113, PSF113_5094

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00222	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfe00400	Phenylalanine, tyrosine and tryptophan biosynthesis	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfe01110	Biosynthesis of secondary metabolites	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfe01230	Biosynthesis of amino acids	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
MetaCyc		chorismate biosynthesis from 3-dehydroquinate	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
KEGG	pfe01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfe01130	Biosynthesis of antibiotics	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR21089	SHIKIMATE DEHYDROGENASE	IPR022893	Shikimate dehydrogenase family	6	273	1.1E-58
Gene3D	G3DSA:3.40.50.720	-	-	-	112	252	2.2E-77
Pfam	PF18317	Shikimate 5'-dehydrogenase C-terminal domain	IPR041121	SDH, C-terminal	252	278	3.8E-6
Hamap	MF_00222	Shikimate dehydrogenase (NADP(+)) [aroE].	IPR022893	Shikimate dehydrogenase family	7	278	27.126591
Pfam	PF01488	Shikimate / quinate 5-dehydrogenase	IPR006151	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	124	202	1.8E-5
Gene3D	G3DSA:3.40.50.10860	Leucine Dehydrogenase, chain A, domain 1	-	-	12	271	2.2E-77
FunFam	G3DSA:3.40.50.720:FF:000086	Quinate/shikimate dehydrogenase	-	-	112	252	5.5E-42
SUPERFAMILY	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	3	111	9.21E-28
Pfam	PF08501	Shikimate dehydrogenase substrate binding domain	IPR013708	Shikimate dehydrogenase substrate binding, N-terminal	12	99	1.2E-20
CDD	cd01065	NAD_bind_Shikimate_DH	-	-	111	268	2.87405E-41
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	IPR036291	NAD(P)-binding domain superfamily	112	281	2.52E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.