Pseudomonas fluorescens F113, PSF113_5348

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 4 115 5.1E-26
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 146 203 1.3E-18
CDD cd17535 REC_NarL-like - - 4 120 1.36954E-44
PANTHER PTHR43214 TWO-COMPONENT RESPONSE REGULATOR IPR039420 Transcriptional regulatory protein WalR-like 2 207 7.6E-47
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 148 203 2.4E-18
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2 115 2.9E-28
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 163 179 1.3E-10
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 137 209 2.07E-18
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 132 1.85E-33
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 149 205 9.57855E-15
Gene3D G3DSA:3.40.50.2300 - - - 2 209 3.2E-58
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 179 191 1.3E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 149 163 1.3E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.