Pseudomonas fluorescens F113, PSF113_5406 (glcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004474 malate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00641
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006097 glyoxylate cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00641
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF51645
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc chitin degradation to ethanol InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe00620 Pyruvate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc D-xylose degradation IV InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc L-arabinose degradation IV InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR42739 MALATE SYNTHASE G IPR006253 Malate synthase G 1 722 0.0
Pfam PF01274 Malate synthase IPR001465 Malate synthase 18 697 0.0
FunFam G3DSA:3.20.20.360:FF:000002 Malate synthase G - - 200 584 0.0
Hamap MF_00641 Malate synthase G [glcB]. IPR006253 Malate synthase G 1 725 423.548431
Gene3D G3DSA:3.20.20.360 Malate synthase, domain 3 IPR046363 Malate synthase, N-terminal and TIM-barrel domains 219 582 0.0
SUPERFAMILY SSF51645 Malate synthase G IPR011076 Malate synthase superfamily 2 722 0.0
Gene3D G3DSA:1.20.1220.12 Malate synthase, domain III IPR044856 Malate synthase, C-terminal superfamily 583 724 9.3E-78
Gene3D G3DSA:3.20.20.360 Malate synthase, domain 3 IPR046363 Malate synthase, N-terminal and TIM-barrel domains 1 218 6.4E-68
CDD cd00728 malate_synt_G IPR006253 Malate synthase G 9 720 0.0
NCBIfam TIGR01345 JCVI: malate synthase G IPR006253 Malate synthase G 4 722 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.