Pseudomonas fluorescens F113, PSF113_5517 (mdcE)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0005975	carbohydrate metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR03134	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
MetaCyc		3-hydroxypropanoate cycle	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		3-hydroxypropanoate/4-hydroxybutanate cycle	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		fatty acid biosynthesis initiation I	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		glyoxylate assimilation	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		candicidin biosynthesis	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
MetaCyc		malonate degradation II (biotin-dependent)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.90.226.10	-	-	-	38	258	2.3E-15
NCBIfam	TIGR03134	JCVI: biotin-independent malonate decarboxylase subunit gamma	IPR009648	Biotin-dependent malonate decarboxylase, gamma subunit	8	267	1.1E-98
SUPERFAMILY	SSF52096	ClpP/crotonase	IPR029045	ClpP/crotonase-like domain superfamily	21	197	3.91E-18
Pfam	PF06833	Malonate decarboxylase gamma subunit (MdcE)	-	-	11	267	2.9E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.