Pseudomonas fluorescens SBW25, PFLU0200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30151 ALKANE SULFONATE ABC TRANSPORTER-RELATED, MEMBRANE SUBUNIT - - 24 270 2.4E-130
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 76 241 3.64536E-6
FunFam G3DSA:1.10.3720.10:FF:000003 Aliphatic sulfonate ABC transporter permease - - 69 263 5.3E-58
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 331 526 2.8E-18
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 353 520 1.2E-16
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 381 516 6.82291E-6
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 63 262 2.4E-14
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 70 254 3.66E-24
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 330 516 7.72E-22
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 90 263 1.4E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.