Pseudomonas fluorescens SBW25, PFLU2885

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008233 peptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008237 metallopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR34858 CYSO-CYSTEINE PEPTIDASE - - 2 171 2.8E-38
SMART SM00232 pad1_6 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain 1 124 6.6E-12
Gene3D G3DSA:3.90.1720.10 endopeptidase domain like (from Nostoc punctiforme) - - 111 247 1.4E-5
SUPERFAMILY SSF54001 Cysteine proteinases IPR038765 Papain-like cysteine peptidase superfamily 112 249 1.96E-8
Gene3D G3DSA:3.40.140.10 Cytidine Deaminase, domain 2 - - 1 110 8.5E-23
Pfam PF00877 NlpC/P60 family IPR000064 Endopeptidase, NLPC/P60 domain 117 241 2.9E-11
SUPERFAMILY SSF102712 JAB1/MPN domain - - 2 137 9.02E-26
CDD cd08073 MPN_NLPC_P60 - - 16 110 8.97375E-49
Pfam PF14464 Prokaryotic homologs of the JAB domain IPR028090 JAB domain, prokaryotic 4 104 5.9E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.