Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 232 | 361 | 3.14E-17 |
Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 251 | 360 | 2.0E-12 |
CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 375 | 534 | 7.85234E-59 |
NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 245 | 366 | 4.0E-11 |
FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 369 | 538 | 2.7E-44 |
Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 374 | 532 | 5.4E-43 |
SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 245 | 313 | 1.4E-5 |
SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 379 | 537 | 3.3E-47 |
Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 550 | 802 | 1.4E-77 |
Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 554 | 793 | 2.3E-59 |
SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 363 | 536 | 2.8E-58 |
SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 554 | 795 | 3.92E-70 |
CDD | cd01948 | EAL | IPR001633 | EAL domain | 554 | 794 | 2.69358E-80 |
Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 235 | 361 | 1.4E-21 |
Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 366 | 538 | 3.2E-54 |
SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 548 | 798 | 5.9E-66 |
CDD | cd00130 | PAS | IPR000014 | PAS domain | 254 | 360 | 3.54144E-6 |
PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 48 | 794 | 4.2E-129 |
NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 370 | 535 | 1.2E-40 |