Pseudomonas fluorescens SBW25, PFLU4520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 148 | 214 | 2.4E-6 |
| SMART | SM00316 | S1_6 | IPR022967 | RNA-binding domain, S1 | 71 | 133 | 30.0 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | IPR012340 | Nucleic acid-binding, OB-fold | 135 | 210 | 1.0E-4 |
| PANTHER | PTHR37296 | CONSERVED VIRULENCE FACTOR B | IPR014464 | Conserved virulence factor B | 2 | 277 | 2.0E-93 |
| Pfam | PF13509 | S1 domain | IPR039566 | Conserved virulence factor B, S1 domain | 4 | 65 | 3.4E-18 |
| Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 75 | 146 | 1.1E-11 |
| Pfam | PF13509 | S1 domain | IPR039566 | Conserved virulence factor B, S1 domain | 72 | 131 | 2.6E-7 |
| SMART | SM00316 | S1_6 | IPR022967 | RNA-binding domain, S1 | 146 | 208 | 1.8E-5 |
| Gene3D | G3DSA:1.10.10.10 | - | IPR036388 | Winged helix-like DNA-binding domain superfamily | 219 | 277 | 1.7E-22 |
| PIRSF | PIRSF012524 | YitL_S1 | IPR014464 | Conserved virulence factor B | 1 | 278 | 9.8E-92 |
| Pfam | PF17783 | CvfB-like winged helix domain | IPR040764 | Conserved virulence factor B-like, winged helix domain | 221 | 277 | 5.6E-23 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.