Pseudomonas fluorescens SBW25, PFLU4764

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01726 JCVI: ABC transporter permease subunit, His/Glu/Gln/Arg/opine family, N-terminal region IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain 8 115 7.4E-19
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 32 220 1.8E-21
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 1 223 2.1E-46
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 8 206 2.75E-38
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 13 211 1.40412E-15
PANTHER PTHR30133 CATIONIC AMINO ACID TRANSPORTER, MEMBRANE COMPONENT - - 1 227 3.6E-91

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.