Pseudomonas fluorescens SBW25, PFLU5210

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00304 HAMP_11 IPR003660 HAMP domain 179 232 1.3E-4
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 241 399 1.6E-43
Pfam PF17152 Periplasmic sensor domain IPR033417 Periplasmic sensor domain CHASE8 41 142 1.3E-28
SMART SM00267 duf1_3 IPR000160 GGDEF domain 234 409 1.9E-61
MobiDBLite mobidb-lite consensus disorder prediction - - 400 420 -
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 231 406 5.0E-56
CDD cd01949 GGDEF IPR000160 GGDEF domain 246 398 6.91691E-62
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 250 402 5.1E-46
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 54 409 1.2E-72
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 240 406 6.0E-42
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 245 398 1.0E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.