Pseudomonas fluorescens SBW25, PFLU5707 (tktA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004802 transketolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.920
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00030 Pentose phosphate pathway InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0
KEGG (InterPro) 00710 Carbon fixation in photosynthetic organisms InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0
KEGG (InterPro) 00730 Thiamine metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0
UniPathway UPA00064 1-deoxy-D-xylulose 5-phosphate biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0
KEGG (InterPro) 00900 Terpenoid backbone biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.970 - - - 326 537 2.6E-85
PANTHER PTHR43522 TRANSKETOLASE IPR033247 Transketolase family 2 663 0.0
NCBIfam TIGR00232 JCVI: transketolase IPR005478 Transketolase, bacterial-like 6 663 0.0
Gene3D G3DSA:3.40.50.970 - - - 1 325 0.0
FunFam G3DSA:3.40.50.920:FF:000003 Transketolase - - 538 664 4.9E-49
SMART SM00861 Transket_pyr_3 IPR005475 Transketolase-like, pyrimidine-binding domain 354 526 4.5E-66
Pfam PF00456 Transketolase, thiamine diphosphate binding domain IPR005474 Transketolase, N-terminal 5 333 0.0
Pfam PF02780 Transketolase, C-terminal domain IPR033248 Transketolase, C-terminal domain 549 655 8.4E-14
Pfam PF02779 Transketolase, pyrimidine binding domain IPR005475 Transketolase-like, pyrimidine-binding domain 353 525 6.8E-46
CDD cd07033 TPP_PYR_DXS_TK_like - - 358 520 1.75022E-55
FunFam G3DSA:3.40.50.970:FF:000003 Transketolase - - 326 537 7.7E-91
SUPERFAMILY SSF52518 Thiamin diphosphate-binding fold (THDP-binding) IPR029061 Thiamin diphosphate-binding fold 334 525 6.82E-67
SUPERFAMILY SSF52518 Thiamin diphosphate-binding fold (THDP-binding) IPR029061 Thiamin diphosphate-binding fold 5 327 2.46E-119
SUPERFAMILY SSF52922 TK C-terminal domain-like IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II 533 664 7.07E-39
FunFam G3DSA:3.40.50.970:FF:000004 Transketolase - - 2 325 0.0
Gene3D G3DSA:3.40.50.920 - IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II 538 665 6.1E-42
CDD cd02012 TPP_TK IPR005474 Transketolase, N-terminal 9 273 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.