Pseudomonas fluorescens SBW25, PFLU5748

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47226
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1820 1931 3.41563E-32
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1518 1654 1.2E-13
Gene3D G3DSA:3.40.50.2300 - - - 1820 1939 1.7E-40
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1820 1931 2.2E-27
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 888 1010 5.47E-14
SMART SM00260 chew_2 IPR002545 CheW-like domain 1647 1791 8.3E-28
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 129 5.63E-18
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1654 1787 2.35E-23
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 619 738 0.0
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1185 1282 4.4E-5
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 617 743 9.2E-24
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1615 1633 7.9E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 744 873 6.4E-18
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 747 870 5.23E-19
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1728 1789 2.0E-19
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 619 706 1.0E-13
MobiDBLite mobidb-lite consensus disorder prediction - - 587 612 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1639 1652 7.9E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 750 834 4.3E-11
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1817 1935 3.27E-37
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 747 843 0.037
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1559 1573 7.9E-10
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1047 1168 6.93E-25
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 616 738 9.42E-24
Coils Coil Coil - - 1361 1388 -
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 617 710 1.4E-6
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1471 1652 3.93E-35
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1046 1183 7.0E-26
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1187 1281 5.3E-15
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1047 1145 1.52894E-11
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1818 1931 3.2E-36
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1660 1792 3.0E-20
Coils Coil Coil - - 854 874 -
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1514 1655 1.7E-20
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 617 709 1.4529E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1185 1314 2.7E-31
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 889 1017 2.8E-12
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 750 807 8.80784E-5
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1047 1144 0.033
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 15 128 1.5E-7
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1185 1283 1.43702E-13
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1330 1469 3.0E-11
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1049 1149 2.0E-12
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 98 2.8E-7
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1468 1654 3.7E-50
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1470 1654 8.6E-59
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 432 555 1.65E-13
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1185 1306 4.06E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.