Pseudomonas putida GB-1, PputGB1_0006 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56719
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56719
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01159
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01159
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 244 262 3.5E-84
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 775 791 3.5E-84
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 4 220 3.9E-96
PRINTS PR00418 DNA topoisomerase II family signature - - 115 129 2.6E-71
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 421 532 4.4E-17
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 182 197 3.5E-84
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 221 394 3.9E-79
Gene3D G3DSA:3.10.20.690 - - - 594 684 5.3E-28
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 420 534 8.9194E-78
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 759 771 3.5E-84
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 734 795 2.5E-30
PRINTS PR00418 DNA topoisomerase II family signature - - 527 539 2.6E-71
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 4 806 101.704628
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 472 481 3.5E-84
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 7 17 3.5E-84
PRINTS PR00418 DNA topoisomerase II family signature - - 422 436 2.6E-71
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 4 221 3.5E-95
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 222 392 4.7E-57
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 393 593 5.6E-121
PRINTS PR00418 DNA topoisomerase II family signature - - 489 505 2.6E-71
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 401 588 1.5E-67
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 700 806 9.4E-29
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 3 805 0.0
PRINTS PR00418 DNA topoisomerase II family signature - - 37 52 2.6E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 362 376 3.5E-84
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 396 797 2.62E-87
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 566 731 1.4E-51
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 376 396 3.5E-84
PRINTS PR00418 DNA topoisomerase II family signature - - 270 283 2.6E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 738 754 2.6E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 197 210 3.5E-84
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 222 400 5.9E-66
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 37 799 0.0
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 7 805 0.0
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 222 394 8.16E-58
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 7 219 1.28E-74
PRINTS PR00418 DNA topoisomerase II family signature - - 72 85 2.6E-71
CDD cd16928 HATPase_GyrB-like - - 38 217 5.57176E-105
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 314 330 3.5E-84
PRINTS PR00418 DNA topoisomerase II family signature - - 507 524 2.6E-71
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 34 175 5.8E-22
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 706 805 6.1E-48
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 33 177 1.3E-28
CDD cd00822 TopoII_Trans_DNA_gyrase - - 221 379 4.75592E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 221 243 3.5E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.