Pseudomonas putida GB-1, PputGB1_0238

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009448 gamma-aminobutyric acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00700
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000521
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008483 transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000521
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003867 4-aminobutyrate transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00700
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppg01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg00650 Butanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppg00310 Lysine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00202 Aminotransferase class-III IPR005814 Aminotransferase class-III 17 420 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 177 424 3.3E-41
FunFam G3DSA:3.40.640.10:FF:000013 4-aminobutyrate aminotransferase - - 60 319 8.5E-123
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 7 417 0.0
FunFam G3DSA:3.90.1150.10:FF:000022 4-aminobutyrate aminotransferase - - 301 418 1.6E-36
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 24 131 0.0016
PANTHER PTHR11986 AMINOTRANSFERASE CLASS III - - 7 422 6.7E-102
NCBIfam TIGR00700 JCVI: 4-aminobutyrate--2-oxoglutarate transaminase IPR004632 4-aminobutyrate aminotransferase, bacterial 10 421 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 124 155 1.3
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 60 319 0.0
CDD cd00610 OAT_like IPR005814 Aminotransferase class-III 8 421 0.0
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 22 424 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.