Pseudomonas putida GB-1, PputGB1_0741

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00924
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00924
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.30.30.60 - IPR023408 Mechanosensitive ion channel MscS, beta-domain superfamily 642 690 2.9E-14
Coils Coil Coil - - 118 145 -
Gene3D G3DSA:3.30.70.100 - - - 699 787 2.2E-9
PANTHER PTHR30347 POTASSIUM CHANNEL RELATED - - 286 798 2.5E-89
Coils Coil Coil - - 75 95 -
SUPERFAMILY SSF82861 Mechanosensitive channel protein MscS (YggB), transmembrane region IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 541 625 2.75E-13
Pfam PF00924 Mechanosensitive ion channel IPR006685 Mechanosensitive ion channel MscS 585 782 4.4E-40
Gene3D G3DSA:1.10.287.1260 - - - 541 641 6.1E-17
SUPERFAMILY SSF82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain IPR011066 Mechanosensitive ion channel MscS, C-terminal 699 793 7.98E-13
Pfam PF12607 Protein of unknown function (DUF3772) IPR022249 Domain of unknown function DUF3772 140 199 1.0E-19
SUPERFAMILY SSF50182 Sm-like ribonucleoproteins IPR010920 LSM domain superfamily 627 692 1.34E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.