Pseudomonas putida GB-1, PputGB1_3232
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppg03070 | Bacterial secretion system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 56 | - |
| Coils | Coil | Coil | - | - | 89 | 116 | - |
| NCBIfam | NF038228 | NCBIFAM: type IVB secretion system protein IcmH/DotU | - | - | 66 | 277 | 1.2E-37 |
| PANTHER | PTHR38033 | MEMBRANE PROTEIN-RELATED | - | - | 49 | 285 | 5.4E-55 |
| NCBIfam | TIGR03349 | JCVI: DotU/TssL family secretion system protein | IPR017732 | Type IV / VI secretion system, DotU | 67 | 273 | 2.4E-63 |
| Gene3D | G3DSA:1.25.40.590 | Type IV / VI secretion system, DotU | IPR038522 | Type IV / VI secretion system, DotU superfamily | 65 | 223 | 1.3E-45 |
| Pfam | PF09850 | Type VI secretion system protein DotU | IPR017732 | Type IV / VI secretion system, DotU | 69 | 270 | 8.6E-62 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.