Pseudomonas putida GB-1, PputGB1_3640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01037
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01037
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppg00410 | beta-Alanine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg00770 | Pantothenate and CoA biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppg00240 | Pyrimidine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF14697 | 4Fe-4S dicluster domain | - | - | 338 | 400 | 4.8E-22 |
| FunFam | G3DSA:3.20.20.70:FF:000027 | Dihydropyrimidine dehydrogenase [NADP(+)] | - | - | 4 | 311 | 1.4E-118 |
| SUPERFAMILY | SSF54862 | 4Fe-4S ferredoxins | - | - | 338 | 418 | 1.34E-12 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | - | - | 1 | 320 | 5.33E-74 |
| Pfam | PF01180 | Dihydroorotate dehydrogenase | IPR005720 | Dihydroorotate dehydrogenase domain | 7 | 305 | 1.5E-26 |
| NCBIfam | TIGR01037 | JCVI: dihydroorotate dehydrogenase family protein | IPR005720 | Dihydroorotate dehydrogenase domain | 5 | 320 | 1.9E-49 |
| PANTHER | PTHR43073 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] | - | - | 307 | 407 | 0.0 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | IPR013785 | Aldolase-type TIM barrel | 4 | 308 | 3.0E-95 |
| CDD | cd02940 | DHPD_FMN | - | - | 3 | 301 | 0.0 |
| Gene3D | G3DSA:3.30.70.20 | - | - | - | 309 | 414 | 7.9E-25 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.