Pseudomonas putida GB-1, PputGB1_3641

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00455	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0045892	negative regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF08362	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00455	TetR bacterial regulatory protein HTH signature	IPR001647	DNA-binding HTH domain, TetR-type	16	29	2.4E-9
SUPERFAMILY	SSF48498	Tetracyclin repressor-like, C-terminal domain	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	81	204	1.17E-35
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	7	73	4.82E-19
PANTHER	PTHR30055	HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR	-	-	9	201	2.8E-16
Pfam	PF00440	Bacterial regulatory proteins, tetR family	IPR001647	DNA-binding HTH domain, TetR-type	16	62	7.4E-17
Gene3D	G3DSA:1.10.357.10	Tetracycline Repressor, domain 2	-	-	64	203	1.7E-42
Gene3D	G3DSA:1.10.10.60	-	-	-	5	63	9.1E-19
Pfam	PF08362	YcdC-like protein, C-terminal region	IPR013573	Transcription regulator YcdC, C-terminal	63	204	6.5E-50
PRINTS	PR00455	TetR bacterial regulatory protein HTH signature	IPR001647	DNA-binding HTH domain, TetR-type	37	60	2.4E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.