Pseudomonas putida GB-1, PputGB1_4668
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppg02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 243 | 411 | 7.9E-46 |
| PANTHER | PTHR46663 | DIGUANYLATE CYCLASE DGCT-RELATED | - | - | 81 | 418 | 4.2E-76 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 234 | 408 | 2.0E-59 |
| Pfam | PF17152 | Periplasmic sensor domain | IPR033417 | Periplasmic sensor domain CHASE8 | 44 | 145 | 1.5E-28 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 237 | 410 | 8.6E-70 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 248 | 404 | 2.6E-51 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 250 | 408 | 1.41521E-65 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 253 | 410 | 6.91E-50 |
| CDD | cd06225 | HAMP | - | - | 185 | 230 | 0.00165168 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 244 | 410 | 1.0E-46 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.